Robert J. and Nancy D. Carney Institute for Brain Science

CRISPR Optimal Target Finder

CRISPR Optimal Target Finder is an open-source web software tool used to identify sites in the genomes of fruit flies, worms and other organisms and determine whether those bits of DNA would be good candidates for gene editing using CRISPR, a science tool sometimes called “molecular scissors.”

 

Kate O’Connor-Giles

Provost’s Associate Professor of Brain Science, Associate Professor of Neuroscience, Associate Director, Center for the Neurobiology of Cells and Circuits

Learn More About CRISPR Optimal Target Finder

Why it’s Important

Scientists often use CRISPR to remove or add genes in order to understand what those genes do in living animals, including humans. Disease, for example, can result from a missing gene. That’s why precision is critical in CRISPR research. Scientists need to know they’re making the intended edit – and only that edit. The CRISPR Optimal Target Finder gives researchers an easy, accessible way to create reliable experiments by locating strong targets for snipping.

What it Does

CRISPR is a revolutionary tool that allows researchers to change the genome of living organisms by cutting and inserting small pieces of DNA at specific locations. CRISPR Optimal Target Finder was designed to help scientists who study the brain by giving them a simple, reliable web search tool that allows them to locate gene sequences of interest and determine whether those sequences are good candidates for CRISPR experiments. 

Where it’s Used

Hundreds of scientists around the world who study the brain, mostly using fruit flies, use the CRISPR Optimal Target Finder. Members of the O’Connor-Giles lab amplify their impact by hosting international courses on use of their tool through organizations like Germany’s European Molecular Biology Laboratory.