At this time, the following pipelines are provided:
Robert J. and Nancy D. Carney Institute for Brain Science
Analysis Pipelines
This example provides a ROI-based method of analyzing resting state fMRI data using AFNI.
This example provides a single example for a ROI-based method of analyzing diffusion tensor imaging data using FSL, TORTOISE, and AFNI.
This example provides one method of performing MVPA using AFNI. It is meant to be a relatively straightforward example for beginners wanting to learn the basics of MVPA. We would like to emphasize that there are many ways of performing MVPA that may be better suited to the design of your study. Be sure to take a look at the links in the Additional Resources section at the bottom of this page for more information.
Each pipeline only provides one example method of analysis. However, there are many techniques or analysis programs that may be better suited to the design of your study. Thus, we have done our best to provide links to additional resources within each pipeline that may be useful in your endeavors.